Expectations that the end of Suharto’s thirty-two years of authoritarian rule in Indonesia in 1998 would usher in an era of political reform, including the end to separatist rebellions, human rights abuses, and military impunity, were dashed by the intensification of old conflicts and outbreak of new forms of violence. Despite initial optimism, efforts to address human rights violations during the New Order stalled. This article surveys the various forms of conflict in Indonesia over the past twenty years and the major trends in scholarship, together with the smaller body of literature framed specifically in terms of peacebuilding. It concludes that much of the literature on peacebuilding has been driven by institutional interests and the incentives created by the funding of these institutions.